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Al-Shifa Department of Ophthalmic Genetics

Advancing eye care through cutting-edge genetic research and innovative treatment approaches

Introduction

Al-Shifa Department of Ophthalmic Genetics

Pakistan is set to witness a groundbreaking advancement in its healthcare system with the establishment of the country's first Ophthalmic Genetics Department with a state-of-the-art Lab. Ophthalmic genetics is a specialized field that focuses on understanding the genetic basis of eye diseases. Genetic disorders affecting the eyes can range from relatively common conditions like glaucoma and cataracts to rare but severe diseases such as retinitis pigmentosa, Leber congenital amaurosis, and various forms of retinal dystrophies. Between 40-70% of childhood blindness in East-Mediterranean region is hereditary in nature. By studying the genetic underpinnings of these conditions, scientists and clinicians can develop targeted therapies and interventions that go beyond symptomatic treatment, addressing the root cause of the disease. Pakistan, with its diverse and dense population, presents a unique genetic landscape. The high prevalence of consanguineous marriages—marriages between closely related individuals—has contributed to a significantly higher incidence of genetic disorders compared to many other countries. Genetic eye diseases are no exception, often leading to severe visual impairment or blindness at an early age. These conditions not only affect the individuals but also place a substantial burden on families and the healthcare system.

Aims of Department

Diagnosis and Treatment

To provide accurate genetic diagnosis and targeted treatment options for patients with inherited eye diseases, improving patient outcomes and quality of life.

Research and Innovation

To advance research in the field of ophthalmic genetics, leading to new discoveries and innovative treatments that can benefit patients both nationally and globally.

Education and Training

To train and educate healthcare professionals and researchers in the latest genetic technologies and methodologies, fostering a new generation of experts in ophthalmic genetics.

Public Awareness

To raise awareness about genetic eye disorders and the importance of early diagnosis and intervention within the community, helping to reduce the incidence of preventable blindness.


Collaborative Networks

To establish national and international collaborations with other genetics and ophthalmology centers, enhancing the sharing of knowledge, resources, and expertise for better patient care and research outcomes.

Our Research Facilities

Molecular Genetics Lab

State-of-the-art equipment for DNA sequencing and analysis

Bioinformatics Center

High-performance computing for genomic data analysis

Services Provided by Ophthalmic Genetics Lab

A molecular genetics lab equipped with Whole Genome Sequencing (WGS), Whole Exome Sequencing (WES), Clinical exome sequencing, Panel sequencing, Restriction fragment length polymorphism (RFLP), Primer designing, targeted sequencing and other essential equipment, along with a state of the art bioinformatics server, can offer a wide range of services:

Clinical Genetics

  • Genetic counselling
  • Genetic testing
  • Carrier status identification
  • RFLP



Genomic Sequencing Services

  • Whole Genome Sequencing (WGS)
  • Whole Exome Sequencing (WES)
  • Clinical Exome Sequencing
  • Panel Sequencing
  • Whole transcriptome sequencing
  • Genotyping by sequencing
  • Targeted sequencing

Bioinformatics Services

Data Analysis and Interpretation

  • WGS data analysis
  • RNAseq data analysis
  • WES data analysis
  • GWAS
  • ChIP-Seq data analysis
  • Metagenomics data analysis (targeted e.g 16s, ITS and Whole Genome)
  • Molecular dynamics simulation


Custom pipeline and bioinformatics software Development

  • R language
  • GWAS
  • Python
  • Linux (Ubuntu)
  • Nextflow
  • nf-core pipelines
  • bash
  • SQL
  • JS

Our Research Team

Dr. Rutaba Gul (Ph.D)

Geneticist

Mr. Abu Bakar (M.Phil)

Bioinformatician, Phlebotomist

Contact us

    +92-51-5487821-5 Ext: 351

   bioinformatician@alshifaeye.org

   Department of Ophthalmic Genetics, Al-Shifa Trust Eye Hospital, Jhelum Road, Rawalpindi, Pakistan.